September 16, 2019

Publications acknowledging WheatCAP support

Our Google Scholar profile  shows the list of WheatCAP publications, how they are being cited and the overall citation indices. 

2019 ( 52 publications) [get this list as a PDF file

  1. Alipour, H., G. Bai, G. Zhang, M.R. Bihamta, V. Mohammadi, S.A. Peyghambari. 2019. Imputation accuracy of wheat GBS data using barley and wheat genome references. PloS One PLoS ONE 14: e0208614. doi:10.1371/journal.pone.0208614
  2. Anderson, J.A., J.J. Wiersma, S.K. Reynolds, G.L. Linkert, R. Caspers, J.A. Kolmer, Y. Jin, M.N. Rouse, R. Dill-Macky, M.J. Smith, L. Dykes, and J.-B. Ohm. 2019. Registration of ‘Shelly’ hard red spring wheat. J. Plant Registrations, doi:10.3198/jpr2018.07.0049crc.
  3. Bernardo, A., P.St. Amand, H.Q. Le, Z. Su, and G. Bai. 2019. Multiplex restriction amplicon sequencing: a novel next-generation sequencing-based marker platform for high-throughput genotyping. Plant Biotechnol. J., doi:10.1111/pbi.13192
  4. Blake, N. K., M. Pumphrey, K. Glover, S. Chao, K. Jordan, J.-L. Jannick, E. A. Akhunov, J. Dubcovsky, H. Bockelman, L. E. Talbert.  2019.  Registration of the Triticeae-CAP Spring Wheat Nested Association Mapping Population.  J. Plant Reg. 13:294-297. doi:10.3198/jpr2018.07.0052crmp
  5. Cai, J., S. Wang, Z. Su, T. Li, X. Zhang, G. Bai. 2019. Meta-analysis of QTL for Fusarium head blight resistance in Chinese wheat landraces. The Crop Journal. doi:10.1016/j.cj.2019.05.003
  6. Cobo, N., L. Pflüger, X. Chen, J. Dubcovsky. 2018. Mapping QTL for resistance to new virulent races of wheat stripe rust from two Argentinean wheat varieties. Crop Sci. 58: 2470-2483. doi:10.2135/cropsci2018.04.0286
  7. Cobo, N., H. Wanjugi, E. Lagudah, J. Dubcovsky. 2019. High-resolution map of wheat QYr.ucw-1BL, an adult-plant stripe rust resistance locus in the same chromosomal region as Yr29. The Plant Genome. 12:180055. doi:10.3835/plantgenome2018.08.0055
  8. Cook, J. P., D. K. Weaver, A. C. Varella, J. D. Sherman, M. L. Hofland, H.-Y. Heo, C. Caron, P. F. Lamb, N. K. Blake, L. E. Talbert. 2019.  Comparison of three alleles at a major solid stem QTL for wheat stem sawfly resistance and agronomic performance in hexaploid wheat.  Crop Sci. 59:1639–1647. doi:10.2135/cropsci2019.01.0009
  9. DeWitt, N., M. Guedira, E. Lauer, M. Sarinelli, P. Tyagi, D. Fu, Q. Hao, J.P. Murphy, D. Marshall, A. Akhunova, K. Jordan, E. Akhunov, and G. Brown-Guedira. 2019. Sequence based mapping identifies AWNS1, a candidate transcription repressor underlying awn suppression at the B1 locus in wheat. bioRxiv. 2019. In Press in New Phytologist.
  10. Dhakal, S., C.-T. Tan, V. Anderson, H. Yu, M.P. Fuentealba, J.C. Rudd, S.D. Haley, Q. Xue, A.M.H. Ibrahim, L. Garza, R. Devkota, S.-Y. Liu. 2018. Mapping and KASP marker development for wheat curl mite resistance in ‘TAM 112’ wheat using linkage and association analysis. Mol. Breeding. 38:119. doi:10.1007/s11032-018-0879-x
  11. Djanaguiraman, M., P.V.V. Prasad, J. Kumari, S.K. Sehgal, B. Friebe, I. Djalovic, Y. Chen, K.H.M. Siddique, B.S. Gill. 2019. Alien chromosome segment from Aegilops speltoides and Dasypyrum villosum increases drought tolerance in wheat via profuse and deep root system. BMC Plant Biology201919:242
  12. Gaire, R, M. Huang, C. Sneller, C. Griffey, G. Brown-Guedira, M. Mohammadi. 2019. Association analysis of baking and milling quality traits in elite soft red winter wheat population. Crop Sci. 59:1085-1094. doi:10.2135/cropsci2018.12.0751
  13. Gao, L., E.M. Babiker, I.C. Nava, J. Nirmala, Z. Bedo, L. Lang, S. Chao, S. Gale, Y. Jin, J.A. Anderson, U. Bansal, R.F. Park, M.N. Rouse, J.M. Bonman, and H. Bariana. 2018. Temperature-sensitive wheat stem rust resistance gene Sr15 is effective against Puccinia graminis f. sp. tritici race TTKSK. Plant Pathol. 68:143–151. doi: 10.1111/ppa.12928
  14. Gill H.S., C. Li, J.S. Sidhu, W. Liu, D. Wilson, G. Bai, G.S. Gill, S.K. Sehgal. 2019. Fine mapping of the wheat leaf rust resistance gene Lr42. Int. J. Mol. Sci. 20, 2445;
  15. Gizaw S.A., J.G. Godoy, M.O. Pumphrey, and A.H. Carter. 2018. Spectral reflectance for indirect selection and genome-wide association analysis of grain yield and drought tolerance in North American spring wheat (Triticum aestivum L.). Crop Sci. 58: 2289-2301. doi: 10.2135/cropsci2017.11.0690
  16. Gizaw, S.A., J. Godoy, K. Garland-Campbell, and A.H. Carter. 2018. Genome-wide association study of yield and component traits in Pacific Northwest winter wheat (Triticum aestivum L.). Crop Sci. 58: 2315-2330. doi:10.2135/cropsci2017.12.0740
  17. Godoy, J., S. Gizaw, S. Chao, N. Blake, A. Carter, R. Cuthbert, J. Dubcovsky, P. Hucl, K. Kephart, C. Pozniak, P.V. V. Prasad, M. Pumphrey, and L. Talbert. 2018. Genome-wide association study of agronomic traits in a spring-planted North American elite hard red spring wheat panel. Crop Science 58:1838-1852. doi:10.2135/cropsci2017.07.0423
  18. He F., R. Pasam, F. Shi, S. Kant, G. Keeble-Gagnere, P. Kay, K. Forrest, A. Fritz, P. Hucl, K. Wiebe, R. Knox, R. Cuthbert, C. Pozniak, A. Akhunova, P.L. Morrell, J.P. Davies, S.R. Webb, G. Spangenberg, B. Hayes, H. Daetwyler, J. Tibbits, M. Hayden, E. Akhunov. 2019. Exome sequencing highlights the role of wild relative introgression in shaping the adaptive landscape of the wheat genome. Nat Genet. 51:896–904. doi:10.1038/s41588-019-0382-2
  19. Howell T, J.I. Moriconi, X. Zhao, T. Fahima, G. E. Santa-Maria, and J. Dubcovsky. 2018. A wheat/rye polymorphism affects seminal root length and is associated with drought and waterlogging tolerance. J Exp. Bot. 70:4027-4037. doi:10.1093/jxb/erz169
  20. Huang M., B. Ward, C. Griffey, D. Van Sanford, A. McKendry, G. Brown-Guedira, P. Tyagi, C Sneller. 2018. The accuracy of genomic prediction between environments and populations for soft wheat traits. Crop Sci. 58: 2274-2288. doi:10.2135/cropsci2017.10.0638
  21. Jernigan K.L., J. Godoy, M. Huang, Y. Zhou, C.F. Morris, K. A. Garland-Campbell, Z. Zhang, A.H. Carter 2018. Association mapping for end-use quality in Pacific Northwest adapted soft white winter wheat. Front. Pl. Sci. 9:271. doi:10.3389/fpls.2018.00271
  22. Kandel, J.S., M. Huang, Z. Zhang, D.Z. Skinner, D.R. See. 2018. Genetic diversity of clinal freezing tolerance variation in winter wheat landraces. Agronomy 8, 95. doi:10.3390/agronomy8060095
  23. Krause, M.R., L. González-Pérez, J. Crossa, P. Pérez-Rodríguez, O. Montesinos-López, R.P. Singh, S. Dreisigacker, J. Poland, J. Rutkoski, M.E. Sorrells, M.A. Gore, and S. Mondal. 2019. Hyperspectral reflectance-derived relationship matrices for genomic prediction of grain yield in wheat. Genes Genomes Genetics. 9:1231-1247. doi:10.1534/g3.118.200856
  24. Kuzay, S., Y. Xu, J. Zhang, A. Katz, S. Pearce, Z. Su, M. Fraser, J. A. Anderson, G. Brown-Guedira, N. DeWitt, A. Peters Haugrud, J.D. Faris, E. Akhunov, G. Bai, J. Dubcovsky. 2019. Identification of a candidate gene for a QTL for spikelet number per spike on wheat chromosome arm 7AL by high-resolution genetic mapping. Theoretical and applied genetics. On line first. doi:10.1007/s00122-019-03382-5
  25. Larkin, D.L., D.N. Lozada, and R.E Mason. 2019. Genomic selection – considerations for successful implementation in wheat breeding programs. Agronomy. doi:10.3390/agronomy9090479
  26. Li, C., H. Lin, A. Chen, M. Lau, J. Jernstedt, and J. Dubcovsky. 2019. Wheat VRN1, FUL2 and FUL3 play critical and redundant roles in spikelet meristem identity and spike determinacy. Development. 146: On line first. doi:10.1242/dev.175398
  27. Lin, M., S. Liu, G. Zhang, and G. Bai. 2018. Effects of TaPHS1 and TaMKK3-A genes on wheat pre-harvest sprouting resistance. Agronomy 8, doi:10.3390/agronomy8100210
  28. Liu, W., J. Kolmer, S. Rynearson, X. Chen, L. Gao, J.A. Anderson, M.K. Turner, M. Pumphrey. 2019. Identifying loci conferring resistance to leaf and stripe rusts in a spring wheat population (Triticum aestivum L.) via genome-wide association mapping.  Phytopathology. doi:10.1094/PHYTO-04-19-0143-R
  29. Lozada, D.L., R.E. Mason, J.M. Sarinelli, and G. Brown-Guedira. 2019 Accuracy of genomic selection for grain yield and agronomic traits in soft red winter wheat. BMC Genetics. Accepted, In press.
  30. Maulana F., K-S. Kim, J.D. Anderson, M.E. Sorrells, T. J. Butler, S. Liu, P. S. Baenziger, P.F. Byrne, and X-F. Ma. 2019. Genomic selection of forage quality traits in winter wheat. Crop Sci. In press.
  31. Muleta, K.T., X. Chen and M. Pumphrey. 2019. Genome-wide mapping of resistance to stripe rust caused by Puccinia striiformis f. sp. tritici in hexaploid winter wheat.  Crop Science. In press.
  32. Nyine, M., S. Wang, K. Kiani, K. Jordan, S.Y. Liu, P. Byrne, S. Haley, S. Baenziger, S. Chao, R. Bowden, E. Akhunov. 2018. Genotype imputation in winter wheat using first-generation haplotype map SNPs improves genome-wide association mapping and genomic predictions of traits. G3.9:125-133. doi:10.1534/g3.118.200664
  33. Ramakrishnan S.M., J.S. Sidhu, S. Ali, N. Kaur, J. Wu, and S.K. Sehgal. 2019. Molecular characterization of bacterial leaf streak resistance in hard winter wheat. PeerJ 7:e7276 doi:10.7717/peerj.7276
  34. Rudd, J. C., R.N. Devkota, A.M.H. Ibrahim, J. A. Baker, S. Baker, R. Sutton, B. Simoneaux, G. Opeña, L.W. Rooney, J.M. Awika, S.-Y. Liu, Q. Xue, B. Bean, C.B. Neely, R.W. Duncan, Y. Jin, B.W. Seabourn, R.L. Bowden, Y. Jin, M.-S. Chen, and R.A. Graybosch. 2019. ‘TAM 204’ wheat, adapted to grazing, grain, and graze-out production systems in the southern High Plains. J. Plant Reg. In press.
  35. Santantonio, N., J.L. Jannink, and M.E. Sorrells. 2019. Homeologous epistasis in wheat: the search for an immortal hybrid. Genetics. Early Online. doi:10.1534/genetics.118.301851
  36. Santantonio, N., J.L. Jannink and M.E. Sorrells. 2019. Prediction of subgenome additive and interaction effects in allohexaploid wheat. G3: Genes, Genomes, Genetics. Early Online. doi:10.1534/g3.118.200613
  37. Santantonio, N., J.L. Jannink and M.E. Sorrells. 2019. A low resolution epistasis mapping approach to identify chromosome arm interactions in allohexaploid wheat. G3: Genes, Genomes, Genetics. Early Online. doi:10.1534/g3.118.200646
  38. Sarinelli, J.M., J.P. Murphy, P. Tyagi, J.B. Holland, J.W. Johnson, M. Mergoum, R.E. Mason, A. Babar, S. Harrison, R. Sutton, C.A. Griffey, and G. Brown‑Guedira. 2019. Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel. Theor. Appl. Genet. 132: 1247–1261. doi:10.1007/s00122-019-03276-6
  39. Shao, M., G. Bai, T. W. Rife, J. Poland, M. Lin, S. Liu, H. Chen, T. Kumssa, A. Fritz, H. Trick, Y. Li, and G. Zhang. 2018. QTL mapping of pre‑harvest sprouting resistance in a white wheat cultivar Danby. Theor. Appl. Genet. 131:1683–1697. doi:10.1007/s00122-018-3107-5
  40. Sidhu, J.S., S.M. Ramakrishnan, S. Ali, A. Bernardo, G. Bai, S. Abdullah G. Ayana, and S.K. Sehgal. 2019. Assessing the genetic diversity and characterizing genomic regions conferring tan spot resistance in rye. PLoS One 14: e0214519 doi:10.1371/journal.pone.0214519
  41. Su, Z., A. Bernardo, B. Tian, H. Chen, S. Wang, H. Ma, S. Cai, D. Liu, D. Zhang, T. Li, H. Trick, P.St. Amand, J. Yu, Z. Zhang, and G. Bai. 2018. A deletion mutation in TaHRC confers Fhb1 resistance to Fusarium Head Blight in wheat. Nat. Genet. 51: 1099-1105. doi:10.1038/s41588-019-0425-8
  42. Sun J., J.A. Poland, S. Mondal, J. Crossa, P. Juliana, R.P. Singh, J.E. Rutkoski, J-L. Jannink, L. Crespo-Herrera, G. Velu, J. Huerta-Espino, M.E. Sorrells. 2019. High-throughput phenotyping platforms enhance genomic selection for wheat grain yield across populations and cycles in early stage. Theor Appl Genet. 132:1705-1720. doi:10.1007/s00122-019-03309-0
  43. Shaw, L. B. Lyu, R. Turner, C. Li, F. Chen, X. Han, D. Fu, and J. Dubcovsky. 2019. FLOWERING LOCUS T2 (FT2) regulates spike development and fertility in temperate cereals. J. of Exp. Bot. 70: 193-204. doi:10.1093/jxb/ery350
  44. Varella, A. C., H. Zhang, D. K. Weaver, J. P. Cook, M. L. Hofland, P. Lamb, S. Chao, J. M. Martin, N. K. Blake, L. E. Talbert.  2019. A novel QTL in durum wheat for resistance to the wheat stem sawfly associated with early expression of stem solidness.  G3: Genes, Genomes and Genetics 9:1999-2006. doi:10.1534/g3.119.400240
  45. Varella, A. C., D. K. Weaver, N.  K. Blake, M. L. Hofland, H.-Y. Heo, J. P. Cook, P. F. Lamb, K. W. Jordan, E. Akhunov, S. Chao, and L. E. Talbert.  2019.  Analysis of recombinant inbred line populations derived from wheat landraces to identify new genes for wheat stem sawfly resistance.  Theor. Appl. Genet. 132: 2195–2207. doi:10.1007/s00122-019-03347-8
  46. Wang R., Y. Liu, K. Isham, W. Zhao, J. Wheeler, N. Klassen, Y. Hu, J.M. Bonman, J. Chen. 2018. QTL identification and KASP marker development for productive tiller and fertile spikelet numbers in two high-yielding hard white spring wheat cultivars. Mol. Bred. 38:135. doi:10.1007/s11032-018-0894-y
  47. Wang, R., T. Gordon, D. Hole, W. Zhao, K. Isham, J. M. Bonman, B. Goates, and J. Chen. 2019. Identification and assessment of two major QTL for dwarf bunt resistance in winter wheat line ‘IDO835’. Theor. Appl. Genet. doi:10.1007/s00122-019-03385-2
  48. Wang W., Q. Pan, B. Tian, F. He, Y. Chen, G. Bai, A. Akhunova, H.N. Trick, E. Akhunov. 2019. Gene editing of the wheat homologs of TONNEAU1–recruiting motif encoding gene affects grain shape and weight in wheat. Plant J. doi:10.1111/tpj.14440
  49. Ward, B.P., G.L. Brown-Guedira, F.L. Kolb, D.A. Van Sanford, P. Tyagi, C.H. Sneller and C.A. Griffey. 2019. Genome-wide association studies for yield-related traits in soft red winter wheat grown in Virginia. PLoS ONE, 14, p.e0208217. doi:10.1371/journal.pone.0208217
  50. Ward, B.P., G.L. Brown-Guedira, P. Tyagi, F.L. Kolb, D.A. Van Sanford, C.H. Sneller and C.A. Griffey 2019. Multi-environment and multi-trait genomic selection models in unbalanced early-generation wheat yield trials. Crop Science. 59:491-507. doi:10.2135/cropsci2018.03.0189
  51. Yang, Y., B.R. Basnet, A.M.H. Ibrahim, J.C. Rudd, X. Chen, R.L. Bowden, Q. Xue, R.D. Devkota, S. Wang, C.D. Johnson, R. Metz, R.E. Mason, D.B. Hays and S-Y. Liu. 2019. Developing KASP markers on a major stripe rust resistance QTL in a popular wheat TAM 111 using 90K array and genotyping-by-sequencing SNPs. Crop Sci. 59:165-175.  doi:10.2135/cropsci2018.05.0349
  52. Zhao, J., N.R. Mohamed, L. Khalaf, W. Chuang, L. Zhao, C.M. Smith, B. Carver, G. Bai. 2019. Development of single nucleotide polymorphism markers for the wheat curl mite resistance gene Cmc4. Crop Sci. 59: 1567-1575. doi:10.2135/cropsci2018.11.0695

Accepted or partially accepted

  1. Chen, J., J. Wheeler, N. Klassen, W. Zhao, K. O’Brien, C. Jackson, J.M. Marshall, K. Schroeder, and X.M. Chen. 2019. Registration of ‘UI Bronze Jade’ hard white winter wheat. Journal of Plant Registration, accepted.
  2. Chen, S., M. N. Rouse, W. Zhang, X. Zhang, Y. Guo, J. Briggs, J. Dubcovsky. 2019. Wheat gene Sr60 encodes a protein with two putative kinase domains that confers resistance to stem rust. New Phytologists Partially accepted
  3. Debernardi, J.M., J.R. Greenwood, E.J. Finnegan, J. Jernstedt, J. Dubcovsky. 2019. Wheat APETALA2-like genes AP2L2 and AP2L5 control the initiation of axillary floral meristems and specify glume-lemma identity. The Plant Journal. Partially accepted
  4. Guttieri, M.J., R.L. Bowden, K. Reinhart, D. Marshall, Y. Jin, B. Seabourn.  2019.  Registration of hard white winter wheat germplasms with adult plant resistance to stem rust, KS14U6380R5, KS16U6380R10, and KS16U6380R11. J. Plant Registrations.  Submitted

In review

  1. Halder J, Zhang J, Ali S, Gill HS, Sidhu JS, Talukdar S, Kleinjan J, Turnipseed B, Sehgal SK (2019) Mining and genomic characterization of resistance against to Tan spot, Stagonospora nodorum blotch (SNB), and Fusarium head blight in Watkins core collection of wheat. BMC Plant Biology (under review since June 2019, will update the status by September 10th)